Difference between revisions of "MStoolbox"
From Marcotte Lab
(Created page with "== Before you start == For using MSblender, you need to run multiple search engines. == Repository == * https://github.com/marcottelab/MS-toolbox == Crux == * http://noble...") |
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== X!Tandem == | == X!Tandem == | ||
+ | === DB setup === | ||
+ | * Setup database with the following command. You need to make 'combined' database (FASTA file) before this. | ||
+ | $ /project/marcotte/ms/bin/fasta_pro.exe <your fasta file> | ||
+ | |||
+ | Here is an example. | ||
+ | <pre>$ /project/marcotte/ms/bin/fasta_pro.exe UPS_combined.fa | ||
+ | fasta_pro file conversion utility, v. 2006.09.15 | ||
+ | input path = UPS_combined.fa | ||
+ | output path = UPS_combined.fa.pro | ||
+ | db type = plain | ||
+ | taejoon@ada:~/project/ups2/DB$</pre> | ||
== InsPecT == | == InsPecT == |
Revision as of 15:24, 27 June 2012
Contents |
Before you start
For using MSblender, you need to run multiple search engines.
Repository
Crux
Tide
MS-GFDB
X!Tandem
DB setup
- Setup database with the following command. You need to make 'combined' database (FASTA file) before this.
$ /project/marcotte/ms/bin/fasta_pro.exe <your fasta file>
Here is an example.
$ /project/marcotte/ms/bin/fasta_pro.exe UPS_combined.fa fasta_pro file conversion utility, v. 2006.09.15 input path = UPS_combined.fa output path = UPS_combined.fa.pro db type = plain taejoon@ada:~/project/ups2/DB$